Christian Diener

Ok, that explains it :) So I will link to a local version for now and switch to the CDN when it is updated to 2.0. I guess the issue...

Yep go ahead. Still trying to figure out what to do about CI. Have to deactivate Python 3.6 if I want to test Gurobi in the CI but can't activate...

I think how it's handled now for all solvers except glpk is that they can only be imported if you have them installed. Also mip is only available for Python...

I think the only real solutions would be the 1. and 3. proposal. 2 doesn't really work due to COBRAPY implementation details and requirements on the solver interface (fast modification...

I think this is already handled by `Constraint.set_linear_coefficients` which will not use sympy at all. Also constraints don't get really added individually but collected internally and added in batches for...

Hi, if you look at the profile of the second case: ``` 18924435 function calls in 6.914 seconds Ordered by: cumulative time ncalls tottime percall cumtime percall filename:lineno(function) 1 0.000...

Hi, I have that working for bi-level problems in a different code base using a slimmer dualizing method that is a bit faster than the optlang default. The major problem...

@KristianJensen It would be the first (whether it's technically possible). This is to be able to inspect a non-optimal solution. For instance `SUBOPTIMAL` or even `NUMERIC` solutions might still be...

You can also request JSON from esearch which should be easier to convert with Python, for instance for your example: https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=sra&term=PRJNA836386&retmax=999&retmode=json .

MICOM doesn't really set any requirements for the taxonomy but you are right that you usually need the taxonomy of your data to match the taxonomy of the model database....