Christian Diener
Christian Diener
Oh cool, will try with that one.
Sorry about that I haven't overwritten the copy function yet. For now you can just read the model again and that should have the same effect, like: ```python from micom...
Awesome thanks! A working docker or singularity image would also be an alternative if that is easier.
Sure, no hurry. We packaged it as a docker image for our workflows for now: https://github.com/Gibbons-Lab/gapseq-docker. Though I noticed there are some dependencies that are not mentioned, like curl for...
Hmm that could be. The parser got an overhaul and reads much more of the Matlab info now. Could you provide an example as described in the issue template? That...
Hmmm, can you also fill in the rest of the issue template, especially the `python -c "import cobra;cobra.show_versions()"` call, because I can't reproduce your timings at all. Reading the core...
Closing for now since it's missing some more info, but feel free to reopen if you have an example where it is slow.
@Midnighter what about having the progress bar flag in the Configuration. Or having a verbosity flag there?
Okay then maybe continue using the logging level as a default and have the arg in that case.
An alternative approach would be to have DictList inspect its own element type and map the printed columns based on that. Not great for encapsulation, but that does not break...