carolin31

error: cannot create directory '/opt/freesurfer-6.0.0': file exists

16

Hi everyone, i don t really know what i am doing here. I am at the very beginning of my learning process on how to use singularity and neurodocker. Currently...

debconf: (No usable dialog-like program is installed, so the dialog based frontend cannot be used.

8

Hello, I am trying to use neurodocker to make an afni container. I first did: neurodocker generate singularity --base=ubuntu:bionic --pkg-manager=apt --install sshfs tcsh --afni method-binaries version=latest install_r_pkgs=true > afni.recipe and...

Does the CompCor function automatically remove linear trends?

1

Hello antsR experts! I have one quick question in regards to aCompCor. Does it automatically remove linear trends from the data before estimating the principal components or is this part...

How to use CompCor to get nuisance regressors for wm and csf

4

Hello, I am analyzing a resting state data set. And I would like to use CompCor to obtain a file that includes 5 principal component regressors for the wm tissue...

how to fix a bad antsRegistration result (EPI to T1)

13

**Describe the problem** Hi ants experts. I ran antsRegistration to coregister an EPI image to a T1. It worked ok for most of my subjects but for some the result...

antsBrainExtraction cut off part of the brain

10

**Describe the problem** Hello ants experts, I am running antsBrainExtraction on brains of older subjects. It worked well for all subjects except of one where it cut off part of...

can't read initial transform ANTs0GenericAffine.mat

19

Hi, I am trying to run antsApplyTransforms to apply the transformation parameters from a structural-to-template warping to functional data (bucket data set from afni, which contains several sub-bricks with each...