carolin31

Hello Jakub, thank you very much for your quick reply! That solved the problem and I was able to built the container. However, when I entered the container and tried...

Hi! I built a freesurfer singularity container (6.0.0) based on the second command from the previous reply. But when I tried using it I got an error message that the...

Hi Steffen, thank you for your reply. I think it would be more convenient if I just rebuilt the container. I did this previously by using the docker container. So...

Hi, I rebuild the container using the exact command above. I still got an error message that the FS license file /opt/freesurfer-6.0.0/license.txt is not found. So I replaced the /license.txt...

Hi, me again ;) Looks like I was wrong. The first script I ran was just re-running FS after editing (RUNNING: recon-all -autorecon2-cp -autorecon3 -s P2009 -openmp 10) That seemed...

Hello Brian, thank you very much for your response! The following question is, I am sure, a very stupid question but again I have never used antsR before. I installed...

Hello antsR experts! I finally learnt some R and succeeded in running CompCor using antsR. Thank you John for the helpful links! I have another question in regards to aCompCor....

oh ok. Sorry for this stupid question but how can I check if the bounding box is too close to the head/brain so that I know if padding could help...

Hi! I checked the bounding box and there is definitely more than 10 mm distance between the brain and the bounding box in all planes. I reran the coregistration with...

Yes, I can share the images. What is the best way to do it? If the translation model is unstable are you suggesting to run the coregistration with just using...