Athul R Vijayan

3D export the "Cellprob" channel

2

Looking for how to export the "Cellprob" channel from cellpose. Can this be exported as a tiff file? This is a z stack. 

Erronous segmentation of the whole stack, But a cropped region works perfectly.

9

I am having this issue with cellpose unable to segment nuclei when I provide with the whole stack. But it does work fine with a small cropped region of the...

Error on the GASP segmentation using GUI: Need more labels than can be represented in the destination type

2


`Need more labels` error from `vigra` during watershed in classic GUI

1

We cant afford to downsample the image or crop further the image. Would be great if there are other ways to fix this issue. 

Classic GUI is unavailable for PlantSeg 2.0.

4

Its a pity that Classic PlantSeg GUI is not included in the 2.0 update. It has been very helpful in bulk image processing for biologists. Is there any guideline how...