Athul R Vijayan
Athul R Vijayan
Thanks a lot. Can one open the .npy file in image J or so and convert to tiff file? It would be really great if this can be saved as...
Hi @kevinjohncutler I have just used the cellpose GUI for performing the segmentation, not the codes. I am not sure what the Scale disk On and Off does? I already...
Hi @kevinjohncutler I rerun this with the command line cellpose- "python -m cellpose --dir ~/Cellpose_test/ --pretrained_model nuclei --diameter 15. --save_tif --use_gpu --do_3D" I have also run the same with diameter...
@kevinjohncutler. Thanks a lot for the update. Just that it's clear for me. How/Where do I change the "normalize99" parameter? Is it possible when using gui? Best, Athul
Thanks a lot @kevinjohncutler, That worked for me. Best, Athul
Thanks a lot.
@qin-yu this error was when i tried to segment cell wall, not nuclei with two channels.
It would be great if a PlantSeg 1.8 version installation procedure is also available so people could still use the classic gui.
Great if PlantSeg gui replacement can happen in 2.0. Any update on when it would be available? It would be great to have some documentation on how to install 1.8...
@qin-yu thanks for the update and fix. @AlexisMaizel, how did you perform batch processing with PlantSeg 2.0? using config file?