spikeinterface

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I've fixed all the tests for the benchmarks in the sortingcomponents, trying to cover all the plot functions available so far. I've also added the benchmark_peak_detection() alongside with its test....

yger

Modifications of the default parameters for SC2 in order to work with tetrode and/or single channel recordings more efficiently, following the WIRED workshop

yger

estimate_motion: Only zero batch or zero channel inputs are supported, but got input shape: [1, 1, 1, 0]

1

Hello, I have a 32-channel recording with the following specs: ``` NwbRecordingExtractor: 32 channels - 30.0kHz - 1 segments - 44,771,040 samples 1,492.37s (24.87 minutes) - float64 dtype - 10.67...

borrepp

Waveform processing by unit very slow in version 0.101.0

10

Hi, Once the waveform figure is plotted its taking a lot of time (~2 mins) to process from waveform of one unit to another. This also happened with 0.100.0 but...

taningh86

As in title

alejoe91

Add more backwards compatibly for MockWaveformExtractor

2

Added several methods to MockWaveformExtractor and changed arguments in compute_blah_extensions function. Will keep in draft until tests are added. Added: - format - get_available_extension_names - precompute_templates - sample_spikes - run_extract_waveforms...

chrishalcrow

This PR adds the possibility, for teaching purpose, to cluster only from a subset of all the spikes. Note, however, that this is still very slow with HDBSCAN, mostly because...

yger

Handling sparsity for sorting_analyzer

3

Hi everyone, I have been updating my code to use the new **SortingAnalyzer** class, and I have some questions about it. - First, I noticed that it's not possible to...

OlivierPeron

correct motion run time and output

2

Hi, I've noticed 2 things when running the motion corrections. First thing is that the recording object post correction has fewer channels. Is that deliberate? Secondly, the estimate motion step...

AOONIH

SpikeInterface Enhancement Proposal: `SortingAnalyzer` object

27

# Rationale Since SpikeInterface v0.90, the processing of a recording + a spike sorting output started from the creation of a `WaveformExtractor` and the subsequent addition of data from the...

samuelgarcia