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RobertsLab
It appears the timeseries repo has hit some type of limit / error when using GitHub issues and assigning co-pilot to address issue as pull request. Can you recreate by...
Has anyone included a direct link to a Shiny App in a published paper, or. say, a link from a GitHub repo release that was referenced in a paper? Basically,...
## Issue Category Please select the category that best describes your issue: - [ ] **Server/Infrastructure** (Raven, Klone, Gannet connectivity, performance, or storage issues) - [x] **Bioinformatics Tools** (Tool installation,...
@kubu4 @sr320 can you point me to documentation of the collection/sequencing methods used to geenerate `ceasmallr` WGBS data? I don't see anything about it in [the repo](https://github.com/sr320/ceasmallr/tree/main). Can I assume...
GO slim?
I am hoping to get GO slims to categorize into higher level groups The link to one that I have from a long long time ago no longer exists http://owl.fish.washington.edu/halfshell/bu-alanine-wd/17-07-20/GO-GOslim.sorted
Now that we are going with 35 - need to optimize other settings. - eg Currently genes are in too many components (highly ranked) thus need to decrease gene lambda...
annotated deg list: https://raw.githubusercontent.com/grace-ac/project-pycno-multispecies-2023/refs/heads/main/output/33-annot-DEGlists/DEGlist_transcripts_pycno_controlVexposed_annot.tab?token=GHSAT0AAAAAADK5SSG2FOXVVDZP67CUF7ZE2IJK4LQ what's the best way to get the dominant GO term for each transcript? The column has lots of GO terms listed
wanting to see what doesn't align to seastar genome with my sea star RNAseq data
Lab members on Windows machines had no documentation for installing Git and connecting it to RStudio, a required setup step for onboarding. ## Changes - **New guide** (`docs/Git-RStudio-Setup-Windows.md`): Step-by-step installation,...
