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best way to get dominant go terms from an annotated deg list?

Open grace-ac opened this issue 3 months ago • 4 comments

annotated deg list: https://raw.githubusercontent.com/grace-ac/project-pycno-multispecies-2023/refs/heads/main/output/33-annot-DEGlists/DEGlist_transcripts_pycno_controlVexposed_annot.tab?token=GHSAT0AAAAAADK5SSG2FOXVVDZP67CUF7ZE2IJK4LQ

what's the best way to get the dominant GO term for each transcript? The column has lots of GO terms listed

grace-ac avatar Nov 04 '25 00:11 grace-ac

https://raw.githubusercontent.com/grace-ac/project-pycno-multispecies-2023/refs/heads/main/output/33-annot-DEGlists/DEGlist_transcripts_pycno_controlVexposed_annot.tab?token=GHSAT0AAAAAADK5SSG3FVPVIKP6B7UZ64762IJNNWA

grace-ac avatar Nov 04 '25 01:11 grace-ac

I cannot access..

you would count the occurrence of GO terms listed

sr320 avatar Nov 04 '25 14:11 sr320

See https://github.com/grace-ac/project-pycno-multispecies-2023/blob/main/output/33-annot-DEGlists/GO_terms_summary.md

and separate GO term summary for each file in 33-annot-DEGlists

sr320 avatar Nov 04 '25 14:11 sr320