Nheyer

BWA mem paired reads uses file size to check equal length

1

I am using bar codes paired end reads where there is a 6 bp bar code on read 1 and a 2 bp bar code on read 2, making these...

bcftools norm -m+ dosn't expand the FORMAT/GL field

5

When using bcftools norm to combine rows, when the genotypes are expanded the FORMAT/GT field is updated but the GL field is unchanged causing a [malformed vcf file](https://samtools.github.io/hts-specs/VCFv4.3.pdf) 1.6.2(GL) this...

Question on the legend

2

I have a XG file with only 5 paths, but when viewing I see some of the sequences up to 15 times with a number in brackets, is there a...