Nheyer
Nheyer
Is anyone still actively working on this, and if not, could I get whatever code does exist, so that I can Finnish it up, as I desperately need the functionality,...
I have a C++ file that spreads the DP and RO to overlapped regions, so that using bcftools norm -m +any will fix the problem in most cases. but if...
it is G, the offending section is [vcfnorm.c line 1590](https://github.com/samtools/bcftools/blob/e313e0f964c18c93f85fe1011e4d34b548802316/vcfnorm.c#L1595), I also included an example of what will break it. steps to reproduse: 1. run `bcftools norm -m+any minimal.vcf -o...
Ok I will work on it then !
I am assuming your input to this was a fasta file , can you not just align that using something like minimap2 ?
@treangen @skoren or @ondovb may be able to help you more, but generally mash map is used primarily for genome wide alignments where a SAM is not very useful so...
work around is to add Ns to make the fines the same length
fixed by pull request #169
@adamnovak