Nice~

[Q] Setting --mindist parameter as 0, but not contain all number of loop(input loop.bedpe)

9

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Errors with chromosome_matrix() and load_contacts() function~

2

Hi, @teunbrand I am so sorry to bother you. For GENOVA, I'm not a veteran. I would prefer to use GENOVA because of the lightness and color palette. But just...

Missing tracks from RNA-seq bigwig file when using pyGenomeTracks

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Hi, @lldelisle Here's a strange question. I hope to have your guidance. In the first genomic region I was interested in, I could successfully plot a perfect figure. However, when...

Hello, When I compared single `merged.stringtie.assembly.gtf` (generated by stringtie merge function) file with known annotation gtf file, I found each line in .tracking has zero value in || columns，how can...

[Q] The same command produces different .clpy results

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**State the question** A clear and concise description of the question. **What have you tried?** - [x] Have you read the documentation and tutorials about your question? **Additional context** Add...

**Are you sure this is a bug?** If unsure, please post your question/situation to the forum first: aidenlab.org/forum.html **Describe the bug** A clear and concise description of what the bug...

Hi, @akundaje , @aboyle , I got some blacklist regions through about 200 Input data and proper kmer length, however none of these regions are present on the sex chromosomes,...