Nice~ comments

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                                            Nice~

hashmap has been removed from CRAN?

@jamesmurray7 Hi, thank you very much! It is a good method to solve this problem.

sparseToDense.py error

Hi, @songxh1996 @aaannaw It does happen that the output densematrix is always shifted down and to the right by one resolution, with or without the --perchr parameter. Is there a...

[Q] Setting --mindist parameter as 0, but not contain all number of loop(input loop.bedpe)

Wow, thanks for your quick reply. If I want to compare the loop strengths of the two groups, would choosing the default `--mindist` (2*pad+2) and one of the BALANCE methods...

Errors with chromosome_matrix() and load_contacts() function~

Hi, @teunbrand Same code, but I'm still getting the same error. I have carefully understood the `chromosome_matrix.R` script regarding the calculation of interchromosomal interactions enrichment. There is a question that...

centromeres setting

Hi, @tan5251 Did you solve the problem in the end? Adding `centromeres = FALSE`: ``` 'names' attribute [3] must be the same length as the vector [1] ```