juicer icon indicating copy to clipboard operation
juicer copied to clipboard

addNorm -w flag not work

Open Miracle-Yao opened this issue 9 months ago • 0 comments

Are you sure this is a bug? If unsure, please post your question/situation to the forum first: aidenlab.org/forum.html

Describe the bug A clear and concise description of what the bug is.

To Reproduce Steps to reproduce the behavior:

  1. Go to '...'
  2. Click on '....'
  3. Scroll down to '....'
  4. See error

Expected behavior A clear and concise description of what you expected to happen.

Screenshots If applicable, add screenshots to help explain your problem.

Desktop (please complete the following information):

  • OS: [e.g. macOS Mojave, Windows 10, etc]
  • Version [e.g. 1.6]

Additional context Add any other context about the problem here.

I am using juicer_tools.2.20.00.jar addnorm2 to normalize the .hic file after juicer_tools.2.20.00.jar sum function, since the .hic file is derived from ENCODE and the resolution can reach 1000, 500, 100, and even 50, 20bp, and then normalization for these resolutions can take a lot of time and resources, I tried to use addnorm -w 5000 to control the choice of resolution for normalization , but so far it seems to fail, because the program will continue to correct at 2000 1000, 500 resolution, it is worth noting that using juicer_tools_2.13.06.jar also has the same result, which seems to be a commonality of v 2.x.

What's the cause of this? Is there a direct solution to the problem?

Looking forward to your reply!

Miracle-Yao avatar Jul 18 '25 14:07 Miracle-Yao