PhysiCell

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so far, in `setting.xml` only `max_time` can be specified to stop the series. it would be nice to have additionally a `max_cell` setting to stop the series, and execution would...

elmbeech

cell_type ~~and substrate~~ names are so far only kept in the `settings.xml` file. if this names by the program could be passed down to the `output.xml`, then there would be...

elmbeech

for parameter scans, usually not all the output is needed. to reduce the need of disk space it would be ideal if one could specify in the seetings.xml what output...

elmbeech

A reminder that we still have some hierarchical config files, rather than the "flattened" syntax that the Studio requires. At least these, it seems: ``` ~/dev/PhysiCell_v1.12.0/sample_projects$ grep parent */config/*.xml cancer_immune/config/PhysiCell_settings.xml:...

rheiland

PhyisiCell_rules typo in some Makefiles

1

* sample_projects/Makefile-default * sample_projects_intracellular/ode/test_sbml1/Makefile * do a global search for others

rheiland

https://github.com/MathCancer/PhysiCell/blob/master/sample_projects/rules_sample/config/cell_rules.csv#L27 and https://github.com/MathCancer/PhysiCell/blob/master/sample_projects/rules_sample/config/cell_rules.csv#L32 need a comma after "decreases"

rheiland

Compiling PhysiCell in a MacBook Pro with M2

1

I have been unable to compile PhysiCell on my MacBookPro After make ANY-PROJECT > make, I obtain this error: ld: symbol(s) not found for architecture arm64 clang-16: error: linker command...

mixcoha

most of the Error write to std::cout only and give no error code back. usually PhysiCell then just quits. a Errors should be written to std::cerr and a proper Error...

elmbeech

find coordinates of a cell

2

I have not found the name of certain variables. To clarify why I need them, I will shortly describe my scenario. This is a wound healing essay, where cells have...

sessler

Running simulation on HPCC

9

I've run a few simulations on my laptop and everything works fine. Now I am trying to use the HPCC at my university to test the simulation, but I encountered...

tony1747