PhysiCell

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fix PhysiCell constants for more compilers

3

This may be premature, but would like to at least suggest it get merged in this release. This addresses compiler errors with `PhysiCell_constants{.h,.cpp}` for certain compilers (I had mentioned `clang++`...

rheiland

Exploring a log file to focus console output

2

**This PR needs feedback before merge** I know I do not pay attention to the console output at startup mostly because it goes by so fast. I barely know what...

drbergman

Throw error if duplicate substrate or parameter

7

Check that each added substrate has a unique name. Same for parameters (for a given type). Also, clean up some code to improve maintainability/readability. Suggestion for future improvement: rename some...

drbergman

This pull request introduces the ability to disable the diffusion solver for substrates. Users can now have multiple substrates without performing the computation of the BioFVM equation, which speeds up...

heberlr

anybody can use the substrate coloring on svgs just by editing the config file, i.e. just by using studio. thanks @rheiland for the great suggestion!

drbergman

PhysiCell_settings-backup.xml concept is broken

1

the Makefile `reset` function relies on a `PhysiCell_settings-backup.xml` file. the problem is that not all sample project generate a`PhysiCell_settings-backup.xml`. the bigger problem is that Makefile `load` function not generate at...

elmbeech

changes to the cp command from make save and make load to allow user project config and custom_modules with a folder structure version2.

7

This pull request now has the Makefile-default, the Makefile, all sample_projects Makefiles, all sample_projects_intracellular Makefiles, and all unit_test Makefiles changed accordingly.

elmbeech

this is the only project that has two operating systems dependent make files. if possible, like in all other sample projects, i think this should be fused in one common...

elmbeech

these Makefiles have e.g. no save and load command.

elmbeech

I have a basic question of what is copied to the output folder. 1. the cell seeding file `cells.csv` or what ever it's name is, is so far not copied...

elmbeech