PhysiCell

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- division vector was not normalized after orthogonal projection onto orientation-defined plane - this would lead to inconsistent displacements - e.g. in 2D, a rand_vec of (0,0,1) would lead to...

drbergman

Currently, every voxel needs to be assigned a substrate concentration for every substrate column. Any substrates without a column are initialized as 0 everywhere, i.e., they ignore the XML. Now,...

drbergman

extended asym div that allows for any combo of cell types for **both** daughter cells. Thank you @davidlzhou for contributing! See the new sample project for how to use. #...

drbergman

See [README.md](https://github.com/drbergman/PhysiCell/tree/rules-upgrade/sample_projects/template_xml_rules_extended) Waiting on reviews before rebase and resolve merge conflicts.

drbergman

Still recording this information, just only one time. See - Add to labels: https://github.com/drbergman/PhysiCell/blob/b35d835f58ef921839c101389e71c5fbfa927419/modules/PhysiCell_MultiCellDS.cpp#L281-L283 - Write data: https://github.com/drbergman/PhysiCell/blob/b35d835f58ef921839c101389e71c5fbfa927419/modules/PhysiCell_MultiCellDS.cpp#L799-L800

drbergman

This fix enables sampling cells within a spherical shell defined by an inner radius r₁ and an outer radius r₂.

heberlr

adding vector causes core dump.

8

this is a very toy project based on the template project. + 3 cell types: tumor, cell_1, cell_2 + 4 substrates: debris, anti-inflamatory, pro-inflamatory, drug_1 + 8 rules + fast-paced...

elmbeech

Take warned_rng variable global to be able to suppress the mislead message 'WARNING: Setting the random seed again.' when models in consecutive episodes are run. This issue was discussed with...

elmbeech

At the episode sample_projects : to reset the cell seeding for the next episode, call pCell->lyse_cell() before calling the pCell->die() function.

elmbeech

lately i was writing new physicell installation manuals for the power users. thereby, i cleaned out the msys2 package list. additionally, i noticed that brew nowadays ships with gcc version...

elmbeech