PhysiCell

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I started implementing a proper inheritance mechanism for PhysiBoSS, and I think it should become a part of the Intracellular class. The idea is to add a new method to...

vincent-noel

Logic in Activating DCs

12

To me, there appears to be an implied relationship between `is_Dirichlet`, `dirichlet_activation_vector`, and `dirichlet_activation_vectors`. It seems `dirichlet_activation_vectors` is an $n_\text{voxels}\times n_\text{substrates}$ array and the others are (supposed to be) the...

drbergman

This adds a new member function to the Parameters class. It is called `find_variable_index`. This function behaves exactly like the already-existing `Parameters.find_index` except it will return -1 when the input...

drbergman

rheiland

Restart a simulation from where it stopped

4

In http://www.mathcancer.org/blog/saving-multicellds-data-from-biofvm/ I see > Future releases of BioFVM will support reading MultiCellDS snapshots (for model initialization). I'd like to be able to restart a simulation from where it stopped....

idontgetoutmuch

BioFVM namespace usage

4

Hi, I am developing some simulations building upon PhysiCell. I might be wrong with the import procedure of the sources, however, including PhysiCell header files forces me to include `BioFVM`...

eOnofri04

I am planning to attend "Computational modelling to study cancer biology and treatments" and rather use the manual process to install PhysiCell on macos in advance, I created a nix...

idontgetoutmuch

Feat/svg substrate

2

Hi Paul, Marco's here! Here is the code to visualize a chosen substrate directly in the SVG. We discussed it the last time when me and Vincent were visiting you...

marcorusc

distinguishing extensions: addons vs. plugins

2

We want to have a community discussion about future extensions to PhysiCell. We begin by discussing the existing "addons" extension for intracellular models and then discuss a possible "plugins" extension....

rheiland

Users have reported getting a strange compilation error after they updated their macOS to 12.6. Running `make` would end in: ``` ld: Assertion failed: (_file->_atomsArrayCount == computedAtomCount && "more atoms...

rheiland