Kupac

rstudio: 2023.9.0+463 -> 2023.12.1+402

5

Update RStudio. Visual mode is still not functional, but otherwise usable. ## Description of changes - Update and add patches - Fix boost to 1.83 - Update to rsconnect 1.2.0...

The rmsb package [fails to build on NixOS](https://hydra.nixos.org/build/246356926/nixlog/1) with the error > Error in loadNamespace(x) : there is no package called 'rstantools' I traced it back to the [call in...

Package installation fails on Nix with the following error message: ``` ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for 'packagefinder':...

Mock tests fail because of missing gzip=False argument

2

Mock tests for the functions `matrix_to_cellranger()` and `filter_with_bustools()` fail in `test_count.py`. System: NixOS Error message: ``` E AssertionError: expected call not found. E Expected: matrix_to_cellranger('/build/tmpl2yjh8en/counts_unfiltered/cells_x_genes.mtx', '/build/tmpl2yjh8en/counts_unfiltered/cells_x_genes.barcodes.txt', '/build/tmpl2yjh8en/counts_unfiltered/cells_x_genes.genes.txt', '/build/source/tests/fixtures/transcripts_to_genes.txt', '/build/tmpl2yjh8en/counts_unfiltered/cellranger') E...