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Mock tests fail because of missing gzip=False argument
Mock tests for the functions matrix_to_cellranger() and filter_with_bustools() fail in test_count.py.
System: NixOS
Error message:
E AssertionError: expected call not found.
E Expected: matrix_to_cellranger('/build/tmpl2yjh8en/counts_unfiltered/cells_x_genes.mtx', '/build/tmpl2yjh8en/counts_unfiltered/cells_x_genes.barcodes.txt', '/build/tmpl2yjh8en/counts_unfiltered/cells_x_genes.genes.txt', '/build/source/tests/fixtures/transcripts_to_genes.txt', '/build/tmpl2yjh8en/counts_unfiltered/cellranger')
E Actual: matrix_to_cellranger('/build/tmpl2yjh8en/counts_unfiltered/cells_x_genes.mtx', '/build/tmpl2yjh8en/counts_unfiltered/cells_x_genes.barcodes.txt', '/build/tmpl2yjh8en/counts_unfiltered/cells_x_genes.genes.txt', '/build/source/tests/fixtures/transcripts_to_genes.txt', '/build/tmpl2yjh8en/counts_unfiltered/cellranger', gzip=False)
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I guess it's still there