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Mock tests fail because of missing gzip=False argument

Open Kupac opened this issue 2 months ago • 2 comments

Mock tests for the functions matrix_to_cellranger() and filter_with_bustools() fail in test_count.py. System: NixOS Error message:

E           AssertionError: expected call not found.
E           Expected: matrix_to_cellranger('/build/tmpl2yjh8en/counts_unfiltered/cells_x_genes.mtx', '/build/tmpl2yjh8en/counts_unfiltered/cells_x_genes.barcodes.txt', '/build/tmpl2yjh8en/counts_unfiltered/cells_x_genes.genes.txt', '/build/source/tests/fixtures/transcripts_to_genes.txt', '/build/tmpl2yjh8en/counts_unfiltered/cellranger')
E             Actual: matrix_to_cellranger('/build/tmpl2yjh8en/counts_unfiltered/cells_x_genes.mtx', '/build/tmpl2yjh8en/counts_unfiltered/cells_x_genes.barcodes.txt', '/build/tmpl2yjh8en/counts_unfiltered/cells_x_genes.genes.txt', '/build/source/tests/fixtures/transcripts_to_genes.txt', '/build/tmpl2yjh8en/counts_unfiltered/cellranger', gzip=False)

Kupac avatar Nov 22 '25 13:11 Kupac

This issue is stale because it has been open 30 days with no activity. Remove stale label or comment or this will be closed in 5 days

github-actions[bot] avatar Dec 23 '25 00:12 github-actions[bot]

I guess it's still there

Kupac avatar Dec 23 '25 02:12 Kupac