Kaiyu (Rossmann) Qiu

icon indicating a website link https://sites.google.com/view/kaiyuhome/homepage icon indicating an email [email protected]

icon company Max Planck Institute for Biology icon location Tuebingen icon location PhD student at Max Planck Institute for Biology (Lupas lab) | Interested in protein evolution and origin of life

Results 3 issues of Kaiyu (Rossmann) Qiu

Building the BioNJ trees

5 comment

Dear all, Is it possible to infer only the BioNJ trees given a sequence alignment? If so, what is the parameter setting for this? Thanks. Best, K.

Redundant alignment shift

2 comment

Dear developers, Thanks very much for this excellent software. I encountered these redundant local alignments after postprocessing (see the figure). These alignments are several-residue shifted with each other, and i...

Model trained on different hierarchies?

2 comment

Dear Authors, Thanks very much for open-sourcing the model and package! The current model, according to the paper, was trained to distinguish relationships on the family level of the SCOPe...