Kaiyu (Rossmann) Qiu

icon indicating a website link https://sites.google.com/view/kaiyuhome/homepage icon indicating an email [email protected]

icon company Max Planck Institute for Biology icon location Tuebingen icon location PhD student at Max Planck Institute for Biology (Lupas lab) | Interested in protein evolution and origin of life

Results 5 comments of Kaiyu (Rossmann) Qiu

RuntimeError: attn_softmax_inplace_forward_ not implemented on CPU

Same. Have you fixed it?

Model 2 subbatch_size not working

Have you solved this? A length of 300AA proteins with subbatch_size 128 reported the memory error on an A100-40G.

Building the BioNJ trees

Thanks for your reply! I tested this with the proteic file in the example folder, it returns bugs: . 429 patterns found (out of a total of 547 sites). ....

Building the BioNJ trees

Yes! ./phyml -i example_dataset -o none -d aa gives the error report I posted above

Model trained on different hierarchies?

Thanks!