Joris van Steenbrugge
Joris van Steenbrugge
Hi @nathandunn , I was wondering if this functionality is still planned to be implemented? We have the same use case as mictadlo in our lab, and this solution would...
> Although RTG tools is recommended, it's not necessary. > > Note, you can change the existing container using configuration: > > ``` > process { > withName: HAPPY_HAPPY {...
@famosab Hi, sorry this PR went completely of my radar! I think it is is obsolete, my previous issues all seem to be solvable with user configuration so I will...
Thank you for taking a look! The pipeline does run successfully without `--keep_multiallelic` and `--keep_ambiguous` set to true. I enabled these two settings to get a slightly higher match rate,...
For some reason the conda based tests are not working..
> Can you run the test locally with the conda profile? `nf-core modules test pypgx/runngspipeline --profile conda -u` @famosab Thank you for taking a look! I get the same error...
@famosab Thanks :) It seems like we are waiting for https://github.com/nextflow-io/nextflow/pull/5489 to get merged. Which should fix the issue (https://github.com/nextflow-io/nextflow/issues/5485)
> Thanks for the contribution. I'm just a bit concerned on how the output is given back. Is there a need for it to be in a zip format ?...