Joris van Steenbrugge

Group in lefserPlot does not reflect levels in groupCol factor

2

Hi, I'm using the vignette as an example. res

0 reads loaded -> floating point exception

3

Hi, I am trying to run DBG2OLC on contigs produced by 10x genomics supernova, with Nanopore reads. However, at some point, the log prints "0 reads loaded." and then the...

pypgx/runngspipeline

1

## PR checklist Closes #5987 This PR adds a new module: pypgx/runngspipeline - [x] This comment contains a description of changes (with reason). - [x] If you've fixed a bug...

Update container image to include RTGtools

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## PR checklist Closes #6637 The container image assigned to happy/happy did not include RTG tools which is sometimes necessary. I updated the container image to a working version. -...

ValueError: Missing variants frozenset

3

### Description of the bug When running the pipeline with `--run_ancestry` an error occurs during process `'PGSCATALOG_PGSCCALC:PGSCCALC:APPLY_SCORE:SCORE_AGGREGATE (reference)` , I will have the command error listed below, but the error...