Jonas Zarzalis

AddressSanitizer: heap-use-after-free on large dataset

1

We have tried to use the csv-parser on a large dataset (8 million lines at 9,9 GB). However when looping over all lines and exectue `row[column_name].get()` we get the following...

There is a helper function in `api-lapisv2.ts`. Include the functionality in `api-lapis.ts` when we have fully migrated to LAPISv2

When on the [explore page](http://localhost:3000/explore/Germany/AllSamples/Past6M/variants?nextcladePangoLineage=ba.2.75*&) and then clicking on the covSpectrum logo in the top left, the console throws many warnings. It seems not to influence the behavior of the...

Check why grep shows many lines not containing the searched term

2

When running `docker logs lapis-lapis-open-1 | grep "9e45aa8e-3bdf-4ff0-a4b7-03eec0419b18"` the output can look like this: `Picked up JAVA_TOOL_OPTIONS: -Djava.security.properties=/layers/paketo-buildpacks_bellsoft-liberica/java-security-properties/java-security.properties -XX:+ExitOnOutOfMemoryError -XX:ActiveProcessorCount=64 -XX:MaxDirectMemorySize=10M -Xmx318690624K -XX:MaxMetaspaceSize=98983K -XX:ReservedCodeCacheSize=240M -Xss1M -XX:+UnlockDiagnosticVMOptions -XX:NativeMemoryTracking=summary -XX:+PrintNMTStatistics -Dorg.springframework.cloud.bindings.boot.enable=true line...

Targets #374 Needs full dataset on testserver #371. This needs SILO to import data from ndjson

Some fields are marked with an asterisk and are therefore required in the Swagger-UI. However, not all required fields are marked. This should be changed. For example, for a nucleotideMutation...

Currently, users have to click 'OK' when editing data in the model. Change this, so also pressing Enter will do the same.

Currently, users have to click add, to add a new metadata field. Then they can click edit, to modify the data. Change this, so when clicking the add button, a...

Currently, the user can only restart the generator by refreshing the page. Decide if this is good enough, else implement a button to restart.

Currently, when trying to download the config, and the config has errors, the generator only shows a tooltip with a generic message. Adapt this, so the message shows the real...