Aannaw

Hello,Professor I have read the PGGB pipline you recommended. I still have some confusion with vg. The reference sequence is a genome assembly? In vg pipeline, How should I generate...

Hello Thanks for your prompt reply! I have another questions. I am confused with the vcf file as input of Vg construct. Now I have a vcf from aligning to...

Hey, Have you solved the problem? I have met the same problem I would much appreciated it if you could give any suggestions!

Hey, Have you solved the problem? I have met the same problem I would much appreciated it if you could give any suggestions!

Hi ~ how should we deal with the extra 800M unanchored to improve anchoring rate (on HiFi)? Can we remove it for subsequent analysis? Is this because the extra 800M...

Hello About the step "`afterdedup`", have you solved? Recently I also am stuck in the problem. When I use `-S afterdedup`, the command can not run and generates the USAGE.......

Hello @sa501428 This is the problem I met when I use juicer version 2.0. However I have changed juicer version 1.6 by SLURM. I encounter another issue I have submit...

Hi，Professor, Thanks for your reply. This [out_error.txt](https://github.com/smirarab/ASTRAL/files/6967979/out_error.txt) is the standard out and error captured when running ./make.sh.There is warning that : Build finished successfully. You can distribute Astral.5.15.4.zip or simply...

Thanks for your reply. I used the kmc_tools to create the matrix between two KMC's databases of illumina reads and assembly genome. I got some line of 0x 1x 2x...

Hi I refer to the link: https://github.com/dfguan/KMC.