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Request: provide option for bamCoverage to not merge contiguous bins having identical counts

Open malcook opened this issue 6 years ago • 5 comments

I see your proposed workaround for #907

However, I'd like to chime in on the how useful having the option to NOT merge such bins would be to an ATAC-Seq workflow which desires to compare read-counts in bins across samples in fixed width bins.

Thanks for your consideration.

malcook avatar May 02 '20 01:05 malcook

I would also like to have this feature. Because for me when generating bigWigs with 1bp bins, it causes a lot of inconvenience. Having an option to do this rather than edit the code regularly for different use-cases would be very much appreciated.

Thanks for the consideration

Delta-43 avatar Jan 24 '22 16:01 Delta-43

Hey, Have you solved the problem? I have met the same problem I would much appreciated it if you could give any suggestions!

Aannaw avatar Jul 09 '22 15:07 Aannaw

You could see the work around which has been proposed by @dpryan79 at #907

LeilyR avatar Jul 09 '22 20:07 LeilyR

I support adding this feature as well... its problematic for graphing multiple samples when they don't have an equal number of bins due to merging.

NanoCoreUSA avatar Aug 23 '22 17:08 NanoCoreUSA

I would also really appreciated to have this as a proper feature.

ckuenne avatar May 04 '23 07:05 ckuenne