Aannaw
Aannaw
Hello I intend to use vg giraffe to align the many illumina pair-end short reads and then use vg call to determine the variants. But I actually do not find...
Hello,Professor I have two genomes from two species. My end goal is to construct a graph of the two genomes from two species and then map tens of illumina short...
Hello,Professor I have `HiFi + HiC, Nanopore + HiC data` The draft assembly of `HiFi data` was finished by `Hifiasm`, draft assembly of` Nanopore data` was finished by `Nextdenova` and...
Hello,Professor I am running the` juicer v1.6 SLURM version`. I split the hicreads like "`split -a 3 -l 90000000 -d --additional-suffix=_R2.fastq Mp5_1.fq & split -a 3 -l 90000000 -d --additional-suffix=_R1.fastq...
Hello I am running `juicer` using `SLURM`. I have copied the the folder `scripts` underneath `SLURM` to my workdir. At the same time, I have prepared the` reference genome directory`...
Hello, Professor, I am installing the astral-mp, my command is : git clone https://github.com/smirarab/ASTRAL/ cd ASTRAL git checkout MP ./make.sh java -D"java.library.path=/data/01/user157/software/ASTRAL/lib/" -jar native_library_tester.jar The path of lib is current...
Hello,Professor I have two pairs of hic raw data files from different DNA libraries with a sample，when I put all input files in a rawdata folder,should I put all two...
I want to assess my assembly genomes. So I run the kmc count (ci0) with illumina_reads and assembly genomes and get two kmc database indepedently. Then I use KMC_tools analyze...
hello I am confusion with the command for the kmc count kmer with assembly genome (fasta). I actually do not find an example. My command is kmc -k21 -ci0 -t40...