Vittorio Zanzani

Rotating specific branches when you have thousands of them

2

Dear @talgalili I have been trying to find a workaround for quite some time now. What I have is a dendrogram with more than 8000 branches. I want to flip...

Option to skip postprocessing

2

### Description of feature I was wondering whether there is some option to **skip the postprocessing** steps, meaning all those that go from the merged matrices (no matter their extension)...

Aggregation of expression data ends up in matrix filled with NaN's

6

Dear SEACell team, first of all thank you for such an interesting and versatile tool. I have been recently using it for creating metacells from a scRNA-seq dataset with cells...

Hi MAGIC developers/maintainers, as the title reads, I was wondering whether there is an option to pass a custom embedding that overrides the PCA computed while running magic.MAGIC.fit_transform. For example...

Hello! First of all, congrats on the amazing package, really! I was trying to project WGCNA modules that were laying around in the lab from past experiments onto a recent...

More flexible function where - `seurat_ref` has a default value of `NULL` - `seurat_ref` is checked with `CheckWGCNAName` only when different than `NULL` - function stops if both `seurat_ref` and...