Yucheng Zhang

icon company Tufts University icon location Medford, MA icon location Bioinformatics Engineer at Tufts TTS Research Technology

Results 3 issues of Yucheng Zhang

Can pepper be used for short contigs?

I am the system admin for HPC. I just deployed pepper to our cluster based on singularity container. I ran pepper with your test datasets, and did not notice any...

RunOmnipose HTTP ERROR 500

Hello, I tried to run RunOmnipose plugin in CellProfiler GUI on our HPC. However, I got HTTP ERROR 500. It's worth mentioning that I ran Cellprofiler using a singularity container....

Environment/Install

Could not open reference sequences file /refseq/markers/genome2markers.length

1 comment

I ran the example `go_metacompass.py -1 SRS044742/SRS044742.denovo_duplicates_marked.trimmed.1.fastq -2 SRS044742/SRS044742.denovo_duplicates_marked.trimmed.2.fastq -U SRS044742/SRS044742.denovo_duplicates_marked.trimmed.singleton.fastq -l 100 -o example_output -k` It failed in the `reference_selection` step. When I checked the log, I found this...