Could not open reference sequences file /refseq/markers/genome2markers.length

Open zhan4429 opened this issue 4 years ago • 1 comments

I ran the example go_metacompass.py -1 SRS044742/SRS044742.denovo_duplicates_marked.trimmed.1.fastq -2 SRS044742/SRS044742.denovo_duplicates_marked.trimmed.2.fastq -U SRS044742/SRS044742.denovo_duplicates_marked.trimmed.singleton.fastq -l 100 -o example_output -k

It failed in the reference_selection step. When I checked the log, I found this Could not open reference sequences file /refseq/markers/genome2markers.length. When I checked my markers folder under the refseq folder, I cannot find this genome2markers.length. Did I download the wrong refseq database? I followed the install.sh.

How should I fix this issue?

Thanks!

Jan 16 '22 06:01 zhan4429

I'm also running into this issue when attempting to run the second example. The genome2markers.length file is also not present in the old refseq database. @vcepeda

Jul 27 '22 14:07 akiledal