George Wu

Hi: I'm trying to use the package to deal with my sparse DNA methylation data, then I find the same issue as: #33 https://github.com/cangermueller/deepcpg/issues/33 I believe the problem is only...

"shadow: full" mode skip symbolic links

1

**Snakemake version** 7.30.1 **Describe the bug** Using "full" mode of shadow will skip files in symbolic link dirs **Minimal example** ``` tree -L 1 . > . > ├── ref...

Add prior knowledge in harmony function？

2

Thank you for this fantastic method which fills the blank in group-level integration. I suggest the method uses group-pratition information rather than group annotation information. Honestly, like your article mentioned...