yubau1112

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run errors

I just encountered the same errors, too. Any solution yet? Thanks!

xHLA invalid input file, /get-reads-alt-unmap.sh not working.

Hi you need to install sambamba http://lomereiter.github.io/sambamba/ if still not found sambamba command you can edit get-reads-alt-unmap.sh add absolute path before sambamba command

how do you perform the full resolution typing?

no add --full --> 4 digit add --full --> 4 digit default --> 4 digit right?

get-reads-alt-unmap.sh get "[bwt_restore_sa] SA-BWT inconsistency: primary is not the same. Abort!"

> I think > > [bwt_restore_sa] SA-BWT inconsistency: primary is not the same. Abort! > > is your main issue. I think this is because you are missing .fna and/or...