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run errors

Open cjieming opened this issue 8 years ago • 5 comments

Hi I am running xHLA on the 1000 Genome Project exome samples. I was able to run for most of them except for some of the samples, which churned out some run errors that could be lumped into 2 kinds: Type 1: Warning message: In mclapply(solution, function(s) { : all scheduled cores encountered errors in user code Error in more$solution : $ operator is invalid for atomic vectors Calls: unique Execution halted

Type 2: Error in apply(mat2[, solution], 1, max) : dim(X) must have a positive length Execution halted

How do I troubleshoot and rectify them? Thank you!

cjieming avatar Jan 25 '18 20:01 cjieming

I have just tried xHLA and had the exact same Type 2 error. Anybody has a solution for it?

Thank you!

MRamirezGarras avatar May 28 '18 12:05 MRamirezGarras

I just encountered the same errors. Any solution yet?

Thanks!

abhisheknrl avatar Nov 15 '18 15:11 abhisheknrl

I just encountered the same errors, too. Any solution yet?

Thanks!

yubau1112 avatar May 07 '19 00:05 yubau1112

I just encountered the same errors, too. Any solution yet?

Thanks!

Gerosyclouds avatar Sep 11 '19 07:09 Gerosyclouds

I just encountered the same errors. Any solution yet?

Thanks!

sgsx11 avatar Sep 25 '23 02:09 sgsx11