yplee614

Use closely related genomes to further scaffolding genome

1

Hi, I use allmaps to scaffold the genome based on the maker. But only 78% of contigs were scaffolded to chromosomes. I want to scaffold the remaining contigs that are...

possible to let getCorrection to plot multiple group?

1

I have 4 group and each have 3 replicates, how can i plot the correction of these samples? Thanks

How to merge the DMR within 100bp or other size?

5

How to merge the DMR within 100bp or other size?

input preads errors

3

when i set the input_type = preads, the errors show below: ``` [11291]$(u'lfs setstripe -c 12 /home/yplee/falcon_correct') sh: lfs: command not found [11291]WARNING: Call u'lfs setstripe -c 12 /home/yplee/falcon_correct' returned...

Insufficient memory to run inference on cuda:0

11

I ran Dorado with the command: dorado correct -m herro-v1/ /home/yplee/strawberry/SRR21142895.fastq > corrected.fasta 2> log The log file shows: [2024-08-04 17:30:50.624] [info] Running: "correct" "-m" "herro-v1/" "/home/yplee/strawberry/SRR21142895.fastq" terminate called after...

I ran Dorado with the command: dorado correct -m herro-v1 filter.fq > corrected.fasta 2> log The log file shows: [2024-08-01 20:37:12.161] [info] Running: "correct" "-m" "herro-v1" "filter.fq" [2024-08-01 20:41:26.694] [info]...

Groups length shows gradient distribution

1

I am working on assembling an autohexaploid plant genome with a genome size of ~2.7 Gb by flow cytometry. In addition, the one published closely related species has 2n=6X=90 karyotype,...