Yichun He

icon indicating a website link https://yichunher.github.io/

icon location PhD candicate in Harvard SEAS and Broad Institute.

Results 4 comments of Yichun He

Questions and Enhancements about ClusterMap

Hi, thanks so much for asking! 1.The position of the centroid represents the 'center'/density peak of each cell. It's neither determined by DAPI image nor equal to the DAPI position...

how to handle empty tiles

Hi, Sorry for the late reply. Thank @rocketeer1998 for helping! I also skipped tiles with less than 20 spots. > if spots_tile.shape[0] < 20: continue

optimization of segmentation

Hi, We are currently working on optimizing a second version and will notify you as soon as it becomes available. Thanks, Yichun

Detailed explanation about plot_with_dapi parameter

Hi, `plot_with_dapi` will plot spots sampled from DAPI if exists. RNA spots will also be plotted. Thanks!