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Try to calculate the depth on a BAM file around 1Gb, got a prompt: out of memory. The command I performed is: mosdepth -Q 10 prefix
In the wiki page of SURVIVOR: There is one positional argument does not have a clear meaning, Pls notice the 0 comes before 30 in the below screenshot. I didn't...
I tried to follow the tutorial of yagmail and constantly getting the same Error [Errno 104] Connection reset by peer. I first tried using an email address and a password...
First of all thanks hengli for making this tool. I used this tool to map long contig to ref genome. I noticed chain value is presented in tag fields. I...
I've recently suffered a lot from indexing a customized human genome (mask certain regions). I found several issues shown as below: 1st:  But I use ls -lh and confirmed...
I used the seqtk/1.3 version and I use subseq to extract reads from fq file and it failed. The in.fq is a simulated file so the query name is with...
The version I use is 1.11 The command I ran is `bcftools view -R .tsv -Oz -o .vcf.gz .vcf.gz` The vcf file is from simulation data, the golden vcf file....
Wish sambamba can help quickly pick out alignment records based on query name list. Like samtools view -N after version 1.12. Much appreciated.
**Describe the bug** A clear and concise description of what the bug is. I would like to install the forest model with the conda installed octopus. However, from ur documentation...
I've recently suffered a lot with building an index using bwa 0.7.17 (detailed issues: https://github.com/lh3/bwa/issues/318) So I hope to use the bwa-mem2 to make another attempt. The only question is...