yxt

Here is the error log:  As shown above, no other error message. Just a simple statement: "Out of memory"

> Hi, mosdepth will use an amount of memory that is about: `4 bytes * length-of-longest-chromosome`. So, on human, where the largest chromosome is about 250 megabases, it will use...

> Hi, this is likely not a mosdepth issue. The memory used by mosdepth is fixed. So it's something with your scheduler (PBS) or parallelizer (gnu parallel) and the way...

Thx for the response! In this case, how should I modify the format of my VCF file to make this right? btw, no warning messages are given by the bcftools...

I'm having the same problem. Only that I'm inputting paired fastq files instead of bam file. The command looks like this: `dragen-os -r /paedyl01/disk1/yangyxt/indexed_genome/hg19 -1 /paedyl01/disk1/yangyxt/wgs/9_samples_20201202/trimmed_sequences/A 160792B_1_val_1.fq.gz -2 /paedyl01/disk1/yangyxt/wgs/9_samples_20201202/trimmed_sequences/A160792B_2_val_2.fq.gz --num-threads...

> Sorry I dunno why the text wrap is disabled... I'll paste the key lines from the error log down below: `Initial paired-end statistics detected for read group all, based...

> Thank you for the response! I'm not sure I can. Even if I want to, the FASTQ files are huge since they are WGS samples.

I found that the error log is not correctly wrapped so here I provide a screenshot for your convenience:  Thanks!

> Hi @yangyxt , can you try a command like: https://github.com/google/deepvariant/blob/r1.4/docs/deepvariant-quick-start.md#notes-on-singularity ? Thanks for the response. I tried a command without --env argument in the very beginning and the warning...

> Yes. I didn't get unexpected results when only warning messages are shown. I just wonder whether the warning message would affect the results in some hidden way that I'm...