yang-nei

AF-multimeter executing time question

1

I got some questions about running AF-multimeter, how many time when I run one 800aa length * 300aa

Hi there! i got some problems about after input multiple structures data into DeepFRI web, how can I collect these data one time by output .json or somewhat that can...

Mutliple databases align questions

1

Hi there! I'm wondering Foldseek server whether it can align mutliple databases one by one and show that the "hit" or "no hit" like traditional sequences align tools and I...

Can i use foldseek online server run multiple monomer structure for multiple m8file (m8.) ?

6

there are hundreds of monomer i shall run, but i don't wanna copy-paste pdb. one by one for similarity protein structure, Is there is a better ways that can resolve...

How to quickly extract iptm score, ptm score for ColabFold_Batch running alphafold multimer files?

4

I'm executing ColabFold_batch for run multiple AlphaFold multimer. However, the number of models I run is too heavy to simply extract some data like pTM score or ipTM score. So...

Model choosing

1

Hi there! I got a inconvenience about model seletion after executed colabfold_batch. I got thousands of pdbs zip. and there are 5 model in them. I gotta choose the best...

As following, I'd like to scan multiple data whatever pdb. form , fasta. form but I have no idea how to work, is there any tools that I can choose...