xzhoubayer

hap1 and hap2 generated from different versions are of different sizes

3

The crop genome is inbred diploid. Estimate genome size is 1.2 Gb. v0.15 output: primary--1.12Gb, hap1-- 1.03Gb, hap2--1.02Gb; v0.19 output: primary--1.1Gb, hap1--831Mb, hap2--470Mb. Default parameter settings were used. Could you...

Position of the contig IDs

1

How change the positions of contig IDs?

Font size

4

The font size is small in the plot. How to change it?

Indexing large genome failed

3

Indexing onion/garlic genome failed since the genome is 16Gb and two chromosomes are longer than 2.1 Gb. Does BWA has a limit for sequence length?

the output is just the --help message

missing 8Mb sequences in the assembly

6

We assembled a set of 11 genomes of the same crop species with hifiasm version 0.19.8-r603. One of the 11, lineA, was an outlier in terms of overall assembly size....