xzhoubayer

Results 5 comments of xzhoubayer

Indexing large genome failed

Does it have limit for the length of each sequence/contig/chromosome?

there is no match anchor found in the input sam file

I got the same error. both reference and query genomes have the same chromosome IDs. for example, >chr1 for reference and >chr1 for query, too.

missing 8Mb sequences in the assembly

> Hi @xzhoubayer, sorry for the late reply. Could you please double check if these missing contigs could be found with a_ct.gfa? I don't see the a_ct.gfa file. This is...

missing 8Mb sequences in the assembly

it is relatively homozygous. I triled -l 0, no difference. I will try --primary and update you.

missing 8Mb sequences in the assembly

I tried --primary and -l0, no improvement. The mapped read still do not show up in asm.bp.p_ctg.gfa and asm.bp.a_ctg.gfa.