Xinyue Zhang (John)

AttributeError: 'tuple' object has no attribute '__module__' when using plot_and_annotate_facets

4

Hi, after I defined the plot_and_annotate_facets function, there's one AttributeError: 'tuple' object has no attribute '__module__' from g.map function. I found plot_and_annotate_facets is a tuple. Could you please tell me...

**Describe the bug** I was trying to load a chest X-ray image in DICOM format, but encountered an error. It seems my DICOM file lacks an attribute called 'TotalPixelMatrixRows,' which...

Support for Awkward Arrays in AnnData's X

7

### Please describe your wishes and possible alternatives to achieve the desired result. I'm thrilled to see that AnnData now supports awkward arrays. This feature has been incredibly useful. I'd...

improve move_to_x

12

**PR Checklist** - [ ] This comment contains a description of changes (with reason) - [ ] Referenced issue is linked - [ ] If you've fixed a bug or...

Improvement of ep.pp.qc_lab_measurements

1

### Description of feature There are two things could be improved for qc_lab_measurements 1. Adding more reference table. Currently there are only Clinical Laboratory reference values. Other reference values (like...

### Description of feature Hi, the current move_to_x() in ehrapy doesn't copy .uns/.obsm/.varm from original adata. It would be great if all the original slots could be copied.

diagnosis was not extracted and make conversion to CONDITION_OCCURRENCE table

4

Hi, I just noticed that diagnosis was was not extracted and transformed to CONDITION_OCCURRENCE table. Since diagnosis are very important in many pipelines, do you have plans to also support...