Xinyue Zhang (John)
Xinyue Zhang (John)
@emdann It would also be great to add plot_milo_diagnostics into milopy. I found this function is pretty helpful and has been used for several times in best-practice notebook.
> Hello @xinyuejohn , thank you for the question. Sorry this is yet poorly documented, and part 2 of the tutorial is long overdue... (There is an example in the...
I will improve this issue later because I will test the function with the ehr data I have
> A few points on this: > > * I wonder if it is a good idea to store computed results (e.g. `adata.obsm["X_pca"]`) together with altered data that would actually...
> Thanks for the example - so to my understanding you add some (maybe externally computed) statistics to the `.obs` field, and then move these to the `.X` field. >...
> Great! > > A few general comments: > > 1. You should consider adding all doc related files to the gitignore. They pollute pull requests. A CI job should...
> > Therefore, if I need to add a `mdata = milo.load()` function, it should substitute the original `milo.count_nhoods` function. What do you think? Do you think it follows the...
@USM-CHU-FGuyon Hi, I'm interested in incorporating diagnosis data from MIMIC-IV into the current pipeline. Before I begin, I would appreciate any guidance or implementation plan you could offer to start...
> @xinyuejohn you're using a M1 right? Got any idea? Sorry for the late reply. I am using Mac with intel i5.