Ying-yuan Xie

> The 5-mer is used in tombo to approximate the signal, but the signal is known to be effected by a much larger context than the 5-mer. The base assigned...

Hi Eva! Thank you for you help! I also want know your recommended thresholds for SVM single sample and SVM delta model.

Hi! Thank you so much for your reply! Below picture shows a example of skip (5293 and 5294 not found). I want to develop methods to detect methylation which need...

Hi! There is not a real deletion. I can find many skips like below. I wonder if there are any settings to avoid event skip, as you know when sequencing,...

Hi! What I want to do is to assign events to each base in the reference genome, but I found many bases do not have its event (be skipped).

Hi marcus, Thank you for your reply! I tried to used the latest version of remora and got the following output when running remora dataset prepare. However, I want know...

Hi, the toml file I used is shown below,  and I did got normal barcode classifications results (and the reads are not short reads), the only problem is that...

I tried dorado v0.5.1, but again, min_soft_flank_threshold and min_hard_flank_threshold setting in the toml file did not work

I checked the read lengths, but did not the read lengths of unclassified reads special.  Can you conveniently test the issue with your own data?

Hi, I apologize for the delay. I'll check this later.