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How to calculate the length for INSERTION type?

1

I found that the mergeSVcallers cannot display the length for insertion. Is there some parameters to add insertion length in the final VCF file ? thank you in advance!

How to set the -s parameter?

2

What is the difference betwen -s 100 and -s 500 ? I do not know the parameter -s. Thank you!

Is there a version of permuteGPAT that can permute XP-EHH score ?

4

Hi. It is so good for me to use your code like GPAT. Recently, I am calculating the XP-EHH for a crop population. I have got the XP-EHH scores for...

Xp-EHH and iHS without genetic distance

1

Hi! Could you simply explain how you calculate XP-EHH and iHS without genetic distance? Thank you in advance!

hifiasm(ONT) miss one chromosome in the assembly

6

Hello! I'm really excited to use your new tool, hifiasm (ONT), as it has significantly improved assembly continuity. Recently, I've been using this tool to enhance our genome assembly. Although...