willigott
willigott
I sometimes have to work on systems where Internet explorer is the default browser (which I cannot change). Then the maps are not loaded, e.g. ``` from escher import Builder...
Is there an option to show a color bar on a map when e.g. reaction data are loaded? One can check it manually by going to `View->Settings` or zoom to...
Let's say I have two reactions connected with each other e.g. `A B C` Is there a way to split those again into two separate reactions `A B` and `B...
# Description of the issue All the links go to _L_Aspartate_ and not to _N-acetyl-seryl-aspartate_ # Page http://bigg.ucsd.edu/universal/metabolites/CE5868
# Description of the issue The compounds have the identical annotation but different IDs. This can then also lead to the problem of having different reaction IDs for identical reactions...
# Description of the issue Identical reactions (according to the annotation) that might differ regarding the proton stoichiometry (which implies that one of the reactions is also unbalanced; e.g. FMNAT...
# Description of the issue Not sure whether that is intended or not but it might be better to name it "xanacid" or something like this!? Not an actual error...
# Description of the issue The given chemical formulas `C24H32N8O12 and C24H34N8O12` seem to disagree with all external links you provide, e.g. KEGG gives `C29H37N9O12` # Page http://bigg.ucsd.edu/universal/metabolites/hpglu
# Description of the issue There is no chemical formula given (neither is the charge). # Page http://bigg.ucsd.edu/universal/metabolites/3hivcoa http://bigg.ucsd.edu/universal/metabolites/3hib http://bigg.ucsd.edu/universal/metabolites/mnt http://bigg.ucsd.edu/universal/metabolites/mm http://bigg.ucsd.edu/universal/metabolites/npthld http://bigg.ucsd.edu/universal/metabolites/ppad
Let's say I take an existing model and do ``` import cbmpy as cbm mod = cbm.CBRead.readSBML3FBC('e_coli_core.xml.gz') cbm.doFBAMinSum(mod) ``` everything will work as expected. However, when I now add a...