willigott

It is Windows 7 Enterprise, Python 3.6.4. I also used `save_html` in Python 2 but with the same result (the produced html cannot be opened in IE). Thanks for looking...

Excellent, thanks for taking care of this.

@zakandrewking: I would love to use this feature, too; are you still planning to add this (or is it already there and I overlook it)? Related but not worth an...

A more complete overview: Table of all reactions for which another BiGG reaction exists that has i) the same Metanetx ID ii) occurs in the same compartment (based on IDs...

@zakandrewking: Thanks for looking into this. I guess the same should be done for the metabolites (see #274). If you decide to merge entries, how will this be documented? 1)...

@ChristianLieven: Sure, no problem. As this was just a very quick check, the code is not generic enough i.e. not of sufficient quality for a PR and I would also...

In addition to the points mentioned, there seems to be also an issue with the defined groups. The published model has 111 groups, while the BiGG version has only 103....

@zakandrewking: Ok, I used the sbml from [here](https://github.com/SBRG/Recon3D/blob/master/Recon3D_GP/model/Recon3D_301.xml), so maybe there is a discrepancy between it and the mat file; the sbml contains 13543 reactions which is the number stated...

Related to this: I just downloaded PESTO and ran `runTestExample.m`. That crashes with ``` Warning: There was a problem with the AMICI toolbox (available at https://github.com/ICB-DCM/AMICI), which is needed to...

Thanks for looking into this. I installed AMICI but then it still does not run as the symbolic toolbox is missing; as far as I can see, this dependency is...