W. Brian Simison

fastqc outofmemoryError from seqtk generated files

1

I am getting an odd FastQC error when reading in more than one of my seqtk sub samples. I ran, for e.g.: seqtk sample -s100 TP29441.fastq.gz 10000 > ../sub_fq/TP29441_10k.fastq if...

option for reference sequence

1

I have tried many different ways to load the reference fasta file, but no luck. I tried no flag and get unrecognized command, I tried 'target' or 'reference' and get...

Hello, we created an index with: 'bwa index -p Tse_SBAPGDGG -a bwtsw Tse_SBAPGDGG.fa' It completed in about an hour (genome is 2.4Gbp). it created the following files in the same...