Meijiao Wang comments

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                                            Meijiao Wang

How did you compose those pretty scentific figures ?

Thanks, it certainly will be helpful and I will try the ArchR and hoping to learn some plotting tips.

How did you compose those pretty scentific figures ?

It seems that ArchR has been released? https://github.com/GreenleafLab/ArchR

How did you compose those pretty scentific figures ?

The mannual of ArchR is well-documented and pratical. Hoping that the last chapter, "Chapter 17 Plot aesthetics in ArchR" will be compeleted in a short time, becasue this will be...

How to improving similarity between snRNA-seq and snATAC-seq nuclei, by tuning parameters like 'k', 'lambda'?

Oh, I selected genes from the snRNA variable genes only, which is recommended.

How to improving similarity between snRNA-seq and snATAC-seq nuclei, by tuning parameters like 'k', 'lambda'?

Wow! that is definitely a good point! Thanks for the message. I will tell the 'quantile_norm' to use my snRNA data as reference.