Francesco

Hi, thanks for using this software. Most likely the problems are due to how boost is installed. In my todo list there is the task to remove boost dependency for...

Thanks for opening an issue. I need more information to help you. Can you post the entire output of cmake and make and not only the error part? This will...

The problem is here (as expected) ``` Linking CXX executable ../bin/FRC /usr/local/lib/libboost_program_options.so: undefined reference to std::basic_ostream& std::__ostream_insert(std::basic_ostream&, char const*, long)@GLIBCXX_3.4.9' /usr/local/lib/libboost_program_options.so: undefined reference tostd::ctype::_M_widen_init() const@GLIBCXX_3.4.11' ``` you need to send...

Hello and thanks for using FRCbam. Unfortunately I am not able to give you much support. FRC_bam has been one of the most interesting projects I worked during my PhD...

Dear Ole, this sounds really strange to me, maybe you are using an old samtools version. What happens if you run "samtools view -H your_bam_file.bam"? The HD attribute is used...

Forgot to say: I always use bwa+samtools recipe to align/sort bam files.